RICE
DATA
© CIRAD
presentation
Data
BARLEY
MAIZE
RICE
WHEAT
contributors
links
using CMap
Gene : type a value (wildcard * allowed)
or choose from the list
AEC6
AIP1
cpt1
CRL1
CRL2
CRL3
CRL4
CRL5
cZOGT1
cZOGT2
d10
d14
d17
d27
d3
DOCS1
DRO1
DSM3
EL5
EUI
FBPA
FIB
FIBLIKE
GLR3-1
MAIF1
miR393a
NADH-GOGAT1
NRR
OsABCG5
OsAEC4
OsAFB2
OsAGAP
OsAMT1.2
OsAMT1.3
OsAMT1;1
OsAMT1;3
OsAMT2;1
OsAMT2;3
OsAMT3;1
OsAMT3;2
OsAMT3;3
OsAMT4;1
OsAMT5;1
OsAMT5;2
OsAPY1
OsARF1
OsARF12
OsARF16
OsASL1
OsCAND1
OsCKI1
OsCKX4
OsCOW1
OsCSLD1
OsCYP2
OsCYT-INV1
OsDGL1
OsDHAR1
OsEIL1
OsEXPA17
OsEXPA30
OsEXPA8
OsEXPB5
OsFH1
OsFIE2
OsGA2ox5
OsGLU3
OsGNA1
OsGPX3
OsGS1;1
OsGSR1
OsHAK2
OsHO1
OsIAA1
OsIAA11
OsIAA13
OsIAA23
OsIAA3
OsIAA8
OsIDD10
OsIPT1
OsIPT2
OsIPT3
OsIPT4
OsIPT7
OsMADS23
OsMADS25
OsMADS27
OsMADS61
OsMOGS
OsMT2b
OsMYB2P-1
OsNAC1
OsNAC2
OsNAC3
OsNAC4
OsNAC5
OsNAC6
OsNAC7
OsNAC8
OsNAR2-1
OsNAR2-2
OsNIP1;1
OsNIP1;2
OsNIP1;3
OsNIP1;4
OsNIP2;1
OsNIP2;2
OsNIP3;1
OsNIP3;2
OsNIP3;3
OsNIP4;1
OsNRT1
OsNRT2-3a
OsNRT2.4
OsNRT2;1
OsNRT2;2
OsORC3
OsPAP10a
OsPHR1
OsPHR2
OsPID
OsPIN1
OsPIN3t
OsPIP1;1
OsPIP1;2
OsPIP1;3
OsPIP2;1
OsPIP2;2
OsPIP2;3
OsPIP2;4
OsPIP2;6
OsPIP2;7
OsPIP2;8
OsPT1
OsPT10
OsPT11
OsPT12
OsPT13
OsPT14
OsPT15
OsPT16
OsPT17
OsPT18
OsPT19
OsPT2
OsPT20
OsPT21
OsPT22
OsPT23
OsPT24
OsPT25
OsPT26
OsPT3
OsPT4
OsPT5
OsPT6
OsPT7
OsPT8
OsPT9
OsPTF1
OsPTR9
OsPupK20-2
OsQHB
OsRAA1
OsRHL1
OsRMC
OsRPK1
OsRR1
OsRR2
OsRSS3
OsSAUR39
OsSCR1
OsSCR2
OsSHR1
OsSHR2
OsSIP1;1
OsSIP2;1
OsSLL1
OsSNDP1
OsSOR1
OsSPR1
OsSPX1
OsTDD1
OsTIP1;1
OsTIP1;2
OsTIP2;1
OsTIP2;2
OsTIP3;1
OsTIP3;2
OsTIP4;1
OsTIP4;2
OsTIP4;3
OsTIP5;1
OsTIR1
OsWOX11
OsWOX3A
OsWOX9
OsWRKY31
OsYUCCA1
PSTOL1
sd1
Class of function
Nutrient transport
Nutrient uptake
Plant architecture
Plant development
Root architecture
Root development
Root hairs
Root transporter
Water transport
Chromosome
Interval left limit (Mb)
>=
Interval right limit (Mb)
<=
OPERATOR :
AND
OR
[ Add criterion ]
Gene : type a value (wildcard * allowed)
or choose from the list
Class of function
Chromosome
Interval left limit (Mb)
Interval right limit (Mb)
RESULTS
:
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[Export results]
Excel
Text
QTL study
Champoux et al (1995)
Courtois et al (2003)
Feng et al (2010)
Hemamalini et al (2000)
Horii et al (2006)
Huang et al (2004)
Ikeda et al (2007)
Li J et al (2005)
Li Z et al (2011)
Lian et al (2005)
Liu et al (2008)
MacMillan et al (2006)
Niones et al (2013)
Obara et al (2010)
Price et al (1999)
Price et al (2000)
Price et al (2002c)
Ray et al (1996)
Redona & Mackill (1996)
Topp et al (2013)
Uga et al (2008)
Uga et al (2010)
Uga et al (2011)
Wang et al (2013)
Xu et al (2004)
Yadav et al (1997)
Yue et al (2006)
Zhang J et al (2001a)
Zhang WP et al (2001b)
Zheng BS et al (2000)
Zheng BS et al (2003)
Zheng HG et al (2008)
Trait
Adventitious root number
Area metaxylem vessels
Deep root number
Deep root ratio
Deep root to shoot ratio
Deep root weight
Deep root weight per tiller
Ellipse aspect ratio2D
Lateral root length
Lateral root number
Major ellipse axis 2D
Maximum network width 2D
Maximum number of roots 2D
Maximum number of roots 3D
Maximum root depth 2D
Maximum root length
Maximum width depth ratio 2D
Median number of roots 2D
Median number of roots 3D
Minor ellipse axis2D
Network bushiness 2D
Network bushiness 3D
Network convex area 2D
Network convex hull volume 3D
Network length distribution 2D
Network pixel area 2D
Network solidity 2D
Network solidity 3D
Network surface area 2D
Network surface area 3D
Number metaxylem vessels
Penetrated root dry weight
Penetrated root length
Penetrated root number
Penetrated root thickness
Proportion deep roots
Relative maximum root length
Relative root dry weight
Root branching index
Root dry weight
Root dry weight in the 00-30cm layer
Root dry weight in the 30-60cm layer
Root dry weight in the 60-90cm layer
Root dry weight per tiller
Root fresh weight
Root growth rate in depth
Root growth rate in volume
Root number
Root penetration index
Root porosity
Root pulling force
Root thickness
Root to shoot ratio
Root to total biomass ratio
Root volume
Seminal root length
Stele area
Surface area of lateral roots
Total root lentgh 2D
Variation root dry weight
Type of stress
Compaction
Nitrogen stress
No stress
Transplanting shock
Water stress
Water stress and transplanting shock
Chromosome
QTL inside a segment: segment left limit (Mp)
>
QTL inside a segment: segment right limit (Mb)
<
QTL overlapping a segment: segment left limit (Mb)
>
QTL overlapping a segment: segment right limit (Mb)
<
OPERATOR :
AND
OR
[ Add criterion ]
QTL study
Trait
Type of stress
Chromosome
QTL inside a segment: segment left limit (Mp)
QTL inside a segment: segment right limit (Mb)
QTL overlapping a segment: segment left limit (Mb)
QTL overlapping a segment: segment right limit (Mb)
RESULTS
:
Page n°
/
Number of records per page
[Export results]
Excel
Text
Trait: type a value (wildcard * allowed)
or choose from the list
Adventitious root number
Area metaxylem vessels
Deep root number
Deep root ratio
Deep root to shoot ratio
Deep root weight
Deep root weight per tiller
Ellipse aspect ratio2D
Lateral root length
Lateral root number
Major ellipse axis 2D
Maximum network width 2D
Maximum number of roots 2D
Maximum number of roots 3D
Maximum root depth 2D
Maximum root length
Maximum width depth ratio 2D
Median number of roots 2D
Median number of roots 3D
Minor ellipse axis2D
Network bushiness 2D
Network bushiness 3D
Network convex area 2D
Network convex hull volume 3D
Network length distribution 2D
Network pixel area 2D
Network solidity 2D
Network solidity 3D
Network surface area 2D
Network surface area 3D
Number metaxylem vessels
Penetrated root dry weight
Penetrated root length
Penetrated root number
Penetrated root thickness
Proportion deep roots
Relative maximum root length
Relative root dry weight
Root branching index
Root dry weight
Root dry weight in the 00-30cm layer
Root dry weight in the 30-60cm layer
Root dry weight in the 60-90cm layer
Root dry weight per tiller
Root fresh weight
Root growth rate in depth
Root growth rate in volume
Root number
Root penetration index
Root porosity
Root pulling force
Root thickness
Root to shoot ratio
Root to total biomass ratio
Root volume
Seminal root length
Stele area
Surface area of lateral roots
Total root lentgh 2D
Variation root dry weight
OPERATOR :
AND
OR
[ Add criterion ]
Trait: type a value (wildcard * allowed)
or choose from the list
RESULTS
:
Page n°
/
Number of records per page
[Export results]
Excel
Text